Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs16846910 chr1:227251801 G/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs16846911 chr1:227251999 T/G 0 406 14.27 14.23 1.48 KM Plot
STAD rs16846972 chr1:227262581 G/A 0 406 14.27 14.23 1.48 KM Plot
STAD rs16846985 chr1:227263362 A/G 0 406 14.27 14.23 1.48 KM Plot
STAD rs16847014 chr1:227266113 G/A 0 406 14.27 14.23 1.48 KM Plot
STAD rs16847035 chr1:227271384 T/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs16847098 chr1:227291953 C/T 0 405 14.37 14.15 1.48 KM Plot
STAD rs16859542 chr1:182685038 T/C 6.91E-6 400 13.97 17.1 4.75 KM Plot
STAD rs16859552 chr1:182685927 G/A 9.46E-6 399 14.02 17.1 4.75 KM Plot
STAD rs16975441 chr18:39525579 C/T 5.98E-7 406 15.12 12.7 4.07 KM Plot
STAD rs17352057 chr5:165205311 C/T 4.57E-5 406 14.5 13.95 1.37 KM Plot
STAD rs17554878 chr7:148993113 G/A 4.52E-5 405 14.22 16.38 3.43 KM Plot
STAD rs1759008 chr1:197026895 G/T 7.03E-9 406 14.07 17.43 6.03 KM Plot
STAD rs17605533 chr1:227306831 T/C 0 405 14.42 14.07 1.48 KM Plot
STAD rs17613166 chr1:227404838 A/G 0 405 14.27 14.45 1.48 KM Plot